Welcome to seagliderOG1’s documentation!

SeagliderOG1 is a Python package aiming to convert seaglider basestation files into OG1 format. At the moment, it converts variables into standard names, passes attributes and reformats to standard units. There is some partial functionality to add sensors and attributes including calibration information.

We provide an example notebook to demonstrate the purpose of the various function and test datasets from Seaglider data in the Labrador Sea.

For recommendations or bug reports, please visit https://github.com/ifmeo-hamburg/seagliderOG1/issues/new

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Contents:

• seagliderOG1 demo
  • Reading basestation files
    • Load single sample dataset
    • Load datasets from a local directory
    • Load datasets from a remote directory (URL)
  • Convert to OG1 format
    • Convert a single (sample) dataset
    • Convert mission from a local directory of basestation files
    • Convert mission from the NCEI server (with p*nc files)
  • Saving data
  • Run multiple missions
• seagliderOG1 API
  • add_gps_info_to_dataset()
  • assign_variable_attributes()
  • convert_to_OG1()
  • convert_to_OG1_dataset()
  • extract_attr_to_keep()
  • extract_attr_to_rename()
  • extract_variables()
  • get_contributors()
  • get_time_attributes()
  • process_and_save_data()
  • process_dataset()
  • rename_dimensions()
  • standardise_OG10()
  • update_dataset_attributes()
  • create_pooch_registry_from_directory()
  • filter_files_by_profile()
  • list_files_in_https_server()
  • load_sample_dataset()
  • read_basestation()
  • plot_ctd_depth_vs_time()
  • plot_depth_colored()
  • plot_profile_depth()
  • show_attributes()
  • show_contents()
  • show_variables()
  • show_variables_by_dimension()
  • save_dataset()
  • add_dive_number()
  • add_sensor_to_dataset()
  • add_sensors_old()
  • add_standard_global_attrs()
  • assign_phase()
  • assign_profile_number()
  • calc_Z()
  • convert_qc_flags()
  • convert_units()
  • convert_units_var()
  • encode_times()
  • encode_times_og1()
  • find_best_dtype()
  • get_sg_attrs()
  • mailer()
  • natural_sort()
  • reformat_units_var()
  • sensor_sampling_period()
  • set_best_dtype()
  • set_best_dtype_value()
  • set_fill_value()
  • split_by_unique_dims()

Indices and tables

• Index

• Module Index

• Search Page